The only complaint with the comic book story I have at the moment is the most obvious and bothering inconsistency so dar, that is the moment, motive and place where Ermac changes sides. We saw that in the game and the comics and they are very different situations.
I would love if that was the only one.
The inconsistencies of the comics show that they were written with bad research of the lore and, specially, lack of info from NRS to Kittelsen, so it created many situations that, in the game, we never see, but we should, since the comics came before.
They come from relations of Cassie/Jackie/Sonya with Erron Black and Outworlders, passing through incredbly absurd situations and relations, to Ermac's side. And now, for sure, Onaga.
And I don't think they are minor. It's almost the main plot of the comic for a very long time.
Unfortunately, instead of filling plot controversy, they wanted to create so much that they became irresponsible.
Even if someone ignores the whole MK plot, the comic is running away even from MKX itself.